JamaMatrix (VisAD 2.0 API)

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visad.matrix
Class JamaMatrix

java.lang.Object
  visad.ThingImpl
      visad.DataImpl
          visad.FunctionImpl
              visad.FieldImpl
                  visad.FlatField
                      visad.matrix.JamaMatrix

All Implemented Interfaces:: Serializable, Cloneable, Data, Field, FlatFieldIface, Function, Thing

public class JamaMatrix
extends FlatField
extends FlatField

JamaMatrix is a VisAD wrapper for JAMA matrices. This class requires the JAMA package.

See Also:: Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class visad.DataImpl
`DataImpl.Syncher`

Field Summary

Fields inherited from class visad.FlatField
`RangeCoordinateSystem, RangeCoordinateSystems, RangeUnits, TupleDimension`

Fields inherited from interface visad.Data
`ABS, ACOS, ACOS_DEGREES, ADD, ASIN, ASIN_DEGREES, ATAN, ATAN_DEGREES, ATAN2, ATAN2_DEGREES, CEIL, COS, COS_DEGREES, DEGREES_TO_RADIANS, DEPENDENT, DIVIDE, EXP, FLOOR, INDEPENDENT, INV_ATAN2, INV_ATAN2_DEGREES, INV_DIVIDE, INV_POW, INV_REMAINDER, INV_SUBTRACT, LOG, MAX, MIN, MULTIPLY, NEAREST_NEIGHBOR, NEGATE, NO_ERRORS, NOP, POW, RADIANS_TO_DEGREES, REMAINDER, RINT, ROUND, SIN, SIN_DEGREES, SQRT, SUBTRACT, TAN, TAN_DEGREES, WEIGHTED_AVERAGE`

Fields inherited from interface visad.Data

ABS, ACOS, ACOS_DEGREES, ADD, ASIN, ASIN_DEGREES, ATAN, ATAN_DEGREES, ATAN2, ATAN2_DEGREES, CEIL, COS, COS_DEGREES, DEGREES_TO_RADIANS, DEPENDENT, DIVIDE, EXP, FLOOR, INDEPENDENT, INV_ATAN2, INV_ATAN2_DEGREES, INV_DIVIDE, INV_POW, INV_REMAINDER, INV_SUBTRACT, LOG, MAX, MIN, MULTIPLY, NEAREST_NEIGHBOR, NEGATE, NO_ERRORS, NOP, POW, RADIANS_TO_DEGREES, REMAINDER, RINT, ROUND, SIN, SIN_DEGREES, SQRT, SUBTRACT, TAN, TAN_DEGREES, WEIGHTED_AVERAGE

Constructor Summary
`JamaMatrix(double[][] entries)` Construct a new JamaMatrix from the given matrix entries.
`JamaMatrix(int rows, int cols)` Construct a new JamaMatrix from the given matrix dimensions.
`JamaMatrix(Object matrix)` Construct a new JamaMatrix from the given JAMA Matrix.
`JamaMatrix(Object matrix, CoordinateSystem range_coord_sys, CoordinateSystem[] range_coord_syses, Set[] range_sets, Unit[] units)` Construct a new JamaMatrix from the specified JAMA Matrix, coordinate systems, range sets and units.
`JamaMatrix(Object matrix, FunctionType type, Gridded2DSet domain_set)` Construct a new JamaMatrix from the given JAMA Matrix, MathType and domain set.
`JamaMatrix(Object matrix, FunctionType type, Gridded2DSet domain_set, CoordinateSystem range_coord_sys, CoordinateSystem[] range_coord_syses, Set[] range_sets, Unit[] units)` Construct a new JamaMatrix from the specified JAMA Matrix, MathType, domain set, coordinate systems, range sets and units.

Method Summary
`JamaMatrix`	`arrayLeftDivide(JamaMatrix B)` Element-by-element left division, C = A.
`JamaMatrix`	`arrayLeftDivideEquals(JamaMatrix B)` Element-by-element left division in place, A = A.
`JamaMatrix`	`arrayRightDivide(JamaMatrix B)` Element-by-element right division, C = A.
`JamaMatrix`	`arrayRightDivideEquals(JamaMatrix B)` Element-by-element right division in place, A = A.
`JamaMatrix`	`arrayTimes(JamaMatrix B)` Element-by-element multiplication, C = A.
`JamaMatrix`	`arrayTimesEquals(JamaMatrix B)` Element-by-element multiplication in place, A = A.
`JamaCholeskyDecomposition`	`chol()`
`double`	`cond()` Matrix condition (2 norm).
`static JamaMatrix`	`convertToMatrix(FlatField field)` Attempt to convert the given VisAD FlatField to a VisAD JamaMatrix Data object.
`double`	`det()` Matrix determinant.
`JamaEigenvalueDecomposition`	`eig()`
`double`	`get(int i, int j)` Get a single element.
`int`	`getColumnDimension()` Get column dimension.
`Object`	`getMatrix()` Return the associated JAMA Matrix object.
`JamaMatrix`	`getMatrix(int[] r, int[] c)` Get a submatrix.
`JamaMatrix`	`getMatrix(int[] r, int j0, int j1)` Get a submatrix.
`JamaMatrix`	`getMatrix(int i0, int i1, int[] c)` Get a submatrix.
`JamaMatrix`	`getMatrix(int i0, int i1, int j0, int j1)` Get a submatrix.
`int`	`getRowDimension()` Get row dimension.
`static JamaMatrix`	`identity(int m, int n)` Generate identity matrix.
`JamaMatrix`	`inverse()` Matrix inverse or pseudoinverse.
`JamaLUDecomposition`	`lu()`
`static void`	`main(String[] args)` Test the JamaMatrix class.
`JamaMatrix`	`minus(JamaMatrix B)` C = A - B
`JamaMatrix`	`minusEquals(JamaMatrix B)` A = A - B
`double`	`norm1()` One norm.
`double`	`norm2()` Two norm.
`double`	`normF()` Frobenius norm.
`double`	`normInf()` Infinity norm.
`JamaMatrix`	`plus(JamaMatrix B)` C = A + B
`JamaMatrix`	`plusEquals(JamaMatrix B)` A = A + B
`void`	`print(int w, int d)` Print the matrix to stdout.
`void`	`print(NumberFormat format, int width)` Print the matrix to stdout.
`void`	`print(PrintWriter output, int w, int d)` Print the matrix to the output stream.
`void`	`print(PrintWriter output, NumberFormat format, int width)` Print the matrix to the output stream.
`JamaQRDecomposition`	`qr()`
`static JamaMatrix`	`random(int m, int n)` Generate matrix with random elements.
`int`	`rank()` Matrix rank.
`static JamaMatrix`	`read(BufferedReader input)` Read a matrix from a stream.
`void`	`set(int i, int j, double s)` Set a single element.
`void`	`setMatrix(double[][] entries)` Set this matrix's samples to correspond to the given entries.
`void`	`setMatrix(int[] r, int[] c, JamaMatrix X)` Set a submatrix.
`void`	`setMatrix(int[] r, int j0, int j1, JamaMatrix X)` Set a submatrix.
`void`	`setMatrix(int i0, int i1, int[] c, JamaMatrix X)` Set a submatrix.
`void`	`setMatrix(int i0, int i1, int j0, int j1, JamaMatrix X)` Set a submatrix.
`void`	`setMatrix(Object matrix)` Set this matrix's samples to correspond to those of the given JAMA Matrix.
`JamaMatrix`	`solve(JamaMatrix B)` Solve A*X = B
`JamaMatrix`	`solveTranspose(JamaMatrix B)` Solve XA = B, which is also A'X' = B'
`JamaSingularValueDecomposition`	`svd()`
`JamaMatrix`	`times(double s)` Multiply a matrix by a scalar, C = s*A
`JamaMatrix`	`times(JamaMatrix B)` Linear algebraic matrix multiplication, A * B
`JamaMatrix`	`timesEquals(double s)` Multiply a matrix by a scalar in place, A = s*A
`double`	`trace()` Matrix trace.
`JamaMatrix`	`transpose()` Matrix transpose.
`JamaMatrix`	`uminus()` Unary minus.

Methods inherited from class visad.FlatField
adjustSamplingError, binary, clearMissing, clone, cloneDouble, cloneDouble, cloneFloat, cloneFloat, computeRanges, convertToField, derivative, derivative, derivative, derivative, derivative, equals, extract, extract, fillField, getDefaultRangeUnits, getFloats, getFloats, getRangeCoordinateSystem, getRangeCoordinateSystem, getRangeDimension, getRangeErrors, getRangeSets, getRangeUnits, getSample, getSample, getStringValues, getValues, getValues, getValues, grabBytes, isFlatField, isMissing, longString, makeField, makeField1, makeField2, makeRational, makeRational, nullRanges, pr, resample, resampleDouble, setRangeErrors, setSample, setSample, setSamples, setSamples, setSamples, setSamples, setSamples, setSamples, setSamples, setSamples, setSamples, toString, unary, unpackFloats, unpackFloats, unpackFloats, unpackOneFloatRangeComp, unpackOneFloatRangeComp, unpackOneRangeComp, unpackOneRangeComp, unpackValues, unpackValues, unpackValues

Methods inherited from class visad.FlatField

adjustSamplingError, binary, clearMissing, clone, cloneDouble, cloneDouble, cloneFloat, cloneFloat, computeRanges, convertToField, derivative, derivative, derivative, derivative, derivative, equals, extract, extract, fillField, getDefaultRangeUnits, getFloats, getFloats, getRangeCoordinateSystem, getRangeCoordinateSystem, getRangeDimension, getRangeErrors, getRangeSets, getRangeUnits, getSample, getSample, getStringValues, getValues, getValues, getValues, grabBytes, isFlatField, isMissing, longString, makeField, makeField1, makeField2, makeRational, makeRational, nullRanges, pr, resample, resampleDouble, setRangeErrors, setSample, setSample, setSamples, setSamples, setSamples, setSamples, setSamples, setSamples, setSamples, setSamples, setSamples, toString, unary, unpackFloats, unpackFloats, unpackFloats, unpackOneFloatRangeComp, unpackOneFloatRangeComp, unpackOneRangeComp, unpackOneRangeComp, unpackValues, unpackValues, unpackValues

Methods inherited from class visad.FieldImpl
`__getitem__, __len__, __setitem__, __setitem__, combine, combine, combine, combine, combine, domainEnumeration, domainFactor, domainFactor, domainMultiply, domainMultiply, domainMultiply, domainMultiply, extract, extract, getDomainCoordinateSystem, getDomainSet, getDomainUnits, getLength, setSample, setSample, setSample, setSamples`

Methods inherited from class visad.FunctionImpl
`__getitem__, __getitem__, evaluate, evaluate, evaluate, evaluate, getDomainDimension, resample`

Methods inherited from class visad.DataImpl
__add__, __add__, __div__, __div__, __mod__, __mod__, __mul__, __mul__, __neg__, __pow__, __pow__, __radd__, __rdiv__, __rmod__, __rmul__, __rpow__, __rsub__, __sub__, __sub__, abs, abs, acos, acos, acosDegrees, acosDegrees, add, add, asin, asin, asinDegrees, asinDegrees, atan, atan, atan2, atan2, atan2Degrees, atan2Degrees, atanDegrees, atanDegrees, binary, ceil, ceil, changeMathType, computeRanges, computeRanges, cos, cos, cosDegrees, cosDegrees, dataClone, divide, divide, exp, exp, floor, floor, getType, local, log, log, longString, max, max, min, min, multiply, multiply, negate, negate, notifyReferences, pow, pow, remainder, remainder, rint, rint, round, round, sin, sin, sinDegrees, sinDegrees, sqrt, sqrt, subtract, subtract, tan, tan, tanDegrees, tanDegrees, unary

Methods inherited from class visad.DataImpl

__add__, __add__, __div__, __div__, __mod__, __mod__, __mul__, __mul__, __neg__, __pow__, __pow__, __radd__, __rdiv__, __rmod__, __rmul__, __rpow__, __rsub__, __sub__, __sub__, abs, abs, acos, acos, acosDegrees, acosDegrees, add, add, asin, asin, asinDegrees, asinDegrees, atan, atan, atan2, atan2, atan2Degrees, atan2Degrees, atanDegrees, atanDegrees, binary, ceil, ceil, changeMathType, computeRanges, computeRanges, cos, cos, cosDegrees, cosDegrees, dataClone, divide, divide, exp, exp, floor, floor, getType, local, log, log, longString, max, max, min, min, multiply, multiply, negate, negate, notifyReferences, pow, pow, remainder, remainder, rint, rint, round, round, sin, sin, sinDegrees, sinDegrees, sqrt, sqrt, subtract, subtract, tan, tan, tanDegrees, tanDegrees, unary

Methods inherited from class visad.ThingImpl
`addReference, removeReference`

Methods inherited from class java.lang.Object
`finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait`

Methods inherited from interface visad.Field
`domainEnumeration, domainFactor, domainMultiply, domainMultiply, getDomainSet, getLength, setSample, setSample`

Methods inherited from interface visad.Function
`evaluate, evaluate, evaluate, evaluate, getDomainCoordinateSystem, getDomainDimension, getDomainUnits, resample`

Methods inherited from interface visad.Data
abs, abs, acos, acos, acosDegrees, acosDegrees, add, add, asin, asin, asinDegrees, asinDegrees, atan, atan, atan2, atan2, atan2Degrees, atan2Degrees, atanDegrees, atanDegrees, binary, ceil, ceil, changeMathType, computeRanges, computeRanges, cos, cos, cosDegrees, cosDegrees, dataClone, divide, divide, exp, exp, floor, floor, getType, local, log, log, longString, max, max, min, min, multiply, multiply, negate, negate, pow, pow, remainder, remainder, rint, rint, round, round, sin, sin, sinDegrees, sinDegrees, sqrt, sqrt, subtract, subtract, tan, tan, tanDegrees, tanDegrees, unary

Methods inherited from interface visad.Data

abs, abs, acos, acos, acosDegrees, acosDegrees, add, add, asin, asin, asinDegrees, asinDegrees, atan, atan, atan2, atan2, atan2Degrees, atan2Degrees, atanDegrees, atanDegrees, binary, ceil, ceil, changeMathType, computeRanges, computeRanges, cos, cos, cosDegrees, cosDegrees, dataClone, divide, divide, exp, exp, floor, floor, getType, local, log, log, longString, max, max, min, min, multiply, multiply, negate, negate, pow, pow, remainder, remainder, rint, rint, round, round, sin, sin, sinDegrees, sinDegrees, sqrt, sqrt, subtract, subtract, tan, tan, tanDegrees, tanDegrees, unary

Methods inherited from interface visad.Thing
`addReference, removeReference`

Constructor Detail

JamaMatrix

public JamaMatrix(int rows,
                  int cols)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Construct a new JamaMatrix from the given matrix dimensions.

Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

JamaMatrix

public JamaMatrix(double[][] entries)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Construct a new JamaMatrix from the given matrix entries.

Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

JamaMatrix

public JamaMatrix(Object matrix)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Construct a new JamaMatrix from the given JAMA Matrix.

Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

JamaMatrix

public JamaMatrix(Object matrix,
                  FunctionType type,
                  Gridded2DSet domain_set)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Construct a new JamaMatrix from the given JAMA Matrix, MathType and domain set.

Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

JamaMatrix

public JamaMatrix(Object matrix,
                  CoordinateSystem range_coord_sys,
                  CoordinateSystem[] range_coord_syses,
                  Set[] range_sets,
                  Unit[] units)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Construct a new JamaMatrix from the specified JAMA Matrix, coordinate systems, range sets and units.

Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

JamaMatrix

public JamaMatrix(Object matrix,
                  FunctionType type,
                  Gridded2DSet domain_set,
                  CoordinateSystem range_coord_sys,
                  CoordinateSystem[] range_coord_syses,
                  Set[] range_sets,
                  Unit[] units)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Construct a new JamaMatrix from the specified JAMA Matrix, MathType, domain set, coordinate systems, range sets and units.

Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

Method Detail

convertToMatrix

public static JamaMatrix convertToMatrix(FlatField field)
                                  throws VisADException,
                                         IllegalAccessException,
                                         InstantiationException,
                                         InvocationTargetException

Attempt to convert the given VisAD FlatField to a VisAD JamaMatrix Data object.

Returns:: The converted object, or null if it could not be converted
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

main

public static void main(String[] args)
                 throws VisADException,
                        RemoteException

Test the JamaMatrix class.

Throws:: VisADException; RemoteException

getMatrix

public Object getMatrix()

Return the associated JAMA Matrix object.

setMatrix

public void setMatrix(Object matrix)
               throws VisADException,
                      IllegalAccessException,
                      InstantiationException,
                      InvocationTargetException

Set this matrix's samples to correspond to those of the given JAMA Matrix.

Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

setMatrix

public void setMatrix(double[][] entries)
               throws VisADException,
                      IllegalAccessException,
                      InstantiationException,
                      InvocationTargetException

Set this matrix's samples to correspond to the given entries.

Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

getRowDimension

public int getRowDimension()
                    throws VisADException,
                           IllegalAccessException,
                           InstantiationException,
                           InvocationTargetException

Get row dimension.

Returns:: The number of rows
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

getColumnDimension

public int getColumnDimension()
                       throws VisADException,
                              IllegalAccessException,
                              InstantiationException,
                              InvocationTargetException

Get column dimension.

Returns:: The number of columns
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

get

public double get(int i,
                  int j)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Get a single element.

Parameters:: i - Row index; j - Column index
Returns:: A(i,j)
Throws:: ArrayIndexOutOfBoundsException; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

getMatrix

public JamaMatrix getMatrix(int i0,
                            int i1,
                            int j0,
                            int j1)
                     throws VisADException,
                            IllegalAccessException,
                            InstantiationException,
                            InvocationTargetException

Get a submatrix.

Parameters:: i0 - Initial row index; i1 - Final row index; j0 - Initial column index; j1 - Final column index
Returns:: A(i0:i1,j0:j1)
Throws:: ArrayIndexOutOfBoundsException - Submatrix indices; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

getMatrix

public JamaMatrix getMatrix(int[] r,
                            int[] c)
                     throws VisADException,
                            IllegalAccessException,
                            InstantiationException,
                            InvocationTargetException

Get a submatrix.

Parameters:: r - Array of row indices; c - Array of column indices
Returns:: A(r(:),c(:))
Throws:: ArrayIndexOutOfBoundsException - Submatrix indices; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

getMatrix

public JamaMatrix getMatrix(int i0,
                            int i1,
                            int[] c)
                     throws VisADException,
                            IllegalAccessException,
                            InstantiationException,
                            InvocationTargetException

Get a submatrix.

Parameters:: i0 - Initial row index; i1 - Final row index; c - Array of column indices
Returns:: A(i0:i1,c(:))
Throws:: ArrayIndexOutOfBoundsException - Submatrix indices; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

getMatrix

public JamaMatrix getMatrix(int[] r,
                            int j0,
                            int j1)
                     throws VisADException,
                            IllegalAccessException,
                            InstantiationException,
                            InvocationTargetException

Get a submatrix.

Parameters:: r - Array of row indices; j0 - Initial column index; j1 - Final column index
Returns:: A(r(:),j0:j1)
Throws:: ArrayIndexOutOfBoundsException - Submatrix indices; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

set

public void set(int i,
                int j,
                double s)
         throws VisADException,
                IllegalAccessException,
                InstantiationException,
                InvocationTargetException

Set a single element.

Parameters:: i - Row index; j - Column index; s - A(i,j)
Throws:: ArrayIndexOutOfBoundsException; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

setMatrix

public void setMatrix(int i0,
                      int i1,
                      int j0,
                      int j1,
                      JamaMatrix X)
               throws VisADException,
                      IllegalAccessException,
                      InstantiationException,
                      InvocationTargetException

Set a submatrix.

Parameters:: i0 - Initial row index; i1 - Final row index; j0 - Initial column index; j1 - Final column index; X - A(i0:i1,j0:j1)
Throws:: ArrayIndexOutOfBoundsException - Submatrix indices; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

setMatrix

public void setMatrix(int[] r,
                      int[] c,
                      JamaMatrix X)
               throws VisADException,
                      IllegalAccessException,
                      InstantiationException,
                      InvocationTargetException

Set a submatrix.

Parameters:: r - Array of row indices; c - Array of column indices; X - A(r(:),c(:))
Throws:: ArrayIndexOutOfBoundsException - Submatrix indices; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

setMatrix

public void setMatrix(int[] r,
                      int j0,
                      int j1,
                      JamaMatrix X)
               throws VisADException,
                      IllegalAccessException,
                      InstantiationException,
                      InvocationTargetException

Set a submatrix.

Parameters:: r - Array of row indices; j0 - Initial column index; j1 - Final column index; X - A(r(:),j0:j1)
Throws:: ArrayIndexOutOfBoundsException - Submatrix indices; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

setMatrix

public void setMatrix(int i0,
                      int i1,
                      int[] c,
                      JamaMatrix X)
               throws VisADException,
                      IllegalAccessException,
                      InstantiationException,
                      InvocationTargetException

Set a submatrix.

Parameters:: i0 - Initial row index; i1 - Final row index; c - Array of column indices; X - A(i0:i1,c(:))
Throws:: ArrayIndexOutOfBoundsException - Submatrix indices; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

transpose

public JamaMatrix transpose()
                     throws VisADException,
                            IllegalAccessException,
                            InstantiationException,
                            InvocationTargetException

Matrix transpose.

Returns:: A'
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

norm1

public double norm1()
             throws VisADException,
                    IllegalAccessException,
                    InstantiationException,
                    InvocationTargetException

One norm.

Returns:: maximum column sum
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

norm2

public double norm2()
             throws VisADException,
                    IllegalAccessException,
                    InstantiationException,
                    InvocationTargetException

Two norm.

Returns:: maximum singular value
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

normInf

public double normInf()
               throws VisADException,
                      IllegalAccessException,
                      InstantiationException,
                      InvocationTargetException

Infinity norm.

Returns:: maximum row sum
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

normF

public double normF()
             throws VisADException,
                    IllegalAccessException,
                    InstantiationException,
                    InvocationTargetException

Frobenius norm.

Returns:: sqrt of sum of squares of all elements
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

uminus

public JamaMatrix uminus()
                  throws VisADException,
                         IllegalAccessException,
                         InstantiationException,
                         InvocationTargetException

Unary minus.

Returns:: -A
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

plus

public JamaMatrix plus(JamaMatrix B)
                throws VisADException,
                       IllegalAccessException,
                       InstantiationException,
                       InvocationTargetException

C = A + B

Parameters:: B - another matrix
Returns:: A + B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

plusEquals

public JamaMatrix plusEquals(JamaMatrix B)
                      throws VisADException,
                             IllegalAccessException,
                             InstantiationException,
                             InvocationTargetException

A = A + B

Parameters:: B - another matrix
Returns:: A + B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

minus

public JamaMatrix minus(JamaMatrix B)
                 throws VisADException,
                        IllegalAccessException,
                        InstantiationException,
                        InvocationTargetException

C = A - B

Parameters:: B - another matrix
Returns:: A - B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

minusEquals

public JamaMatrix minusEquals(JamaMatrix B)
                       throws VisADException,
                              IllegalAccessException,
                              InstantiationException,
                              InvocationTargetException

A = A - B

Parameters:: B - another matrix
Returns:: A - B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

arrayTimes

public JamaMatrix arrayTimes(JamaMatrix B)
                      throws VisADException,
                             IllegalAccessException,
                             InstantiationException,
                             InvocationTargetException

Element-by-element multiplication, C = A.*B

Parameters:: B - another matrix
Returns:: A.*B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

arrayTimesEquals

public JamaMatrix arrayTimesEquals(JamaMatrix B)
                            throws VisADException,
                                   IllegalAccessException,
                                   InstantiationException,
                                   InvocationTargetException

Element-by-element multiplication in place, A = A.*B

Parameters:: B - another matrix
Returns:: A.*B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

arrayRightDivide

public JamaMatrix arrayRightDivide(JamaMatrix B)
                            throws VisADException,
                                   IllegalAccessException,
                                   InstantiationException,
                                   InvocationTargetException

Element-by-element right division, C = A./B

Parameters:: B - another matrix
Returns:: A./B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

arrayRightDivideEquals

public JamaMatrix arrayRightDivideEquals(JamaMatrix B)
                                  throws VisADException,
                                         IllegalAccessException,
                                         InstantiationException,
                                         InvocationTargetException

Element-by-element right division in place, A = A./B

Parameters:: B - another matrix
Returns:: A./B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

arrayLeftDivide

public JamaMatrix arrayLeftDivide(JamaMatrix B)
                           throws VisADException,
                                  IllegalAccessException,
                                  InstantiationException,
                                  InvocationTargetException

Element-by-element left division, C = A.\B

Parameters:: B - another matrix
Returns:: A.\B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

arrayLeftDivideEquals

public JamaMatrix arrayLeftDivideEquals(JamaMatrix B)
                                 throws VisADException,
                                        IllegalAccessException,
                                        InstantiationException,
                                        InvocationTargetException

Element-by-element left division in place, A = A.\B

Parameters:: B - another matrix
Returns:: A.\B
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

times

public JamaMatrix times(double s)
                 throws VisADException,
                        IllegalAccessException,
                        InstantiationException,
                        InvocationTargetException

Multiply a matrix by a scalar, C = s*A

Parameters:: s - scalar
Returns:: s*A
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

timesEquals

public JamaMatrix timesEquals(double s)
                       throws VisADException,
                              IllegalAccessException,
                              InstantiationException,
                              InvocationTargetException

Multiply a matrix by a scalar in place, A = s*A

Parameters:: s - scalar
Returns:: replace A by s*A
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

times

public JamaMatrix times(JamaMatrix B)
                 throws VisADException,
                        IllegalAccessException,
                        InstantiationException,
                        InvocationTargetException

Linear algebraic matrix multiplication, A * B

Parameters:: B - another matrix
Returns:: Matrix product, A * B
Throws:: IllegalArgumentException - Matrix inner dimensions must agree; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

solve

public JamaMatrix solve(JamaMatrix B)
                 throws VisADException,
                        IllegalAccessException,
                        InstantiationException,
                        InvocationTargetException

Solve A*X = B

Parameters:: B - right hand side
Returns:: solution if A is square, least squares solution otherwise
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

solveTranspose

public JamaMatrix solveTranspose(JamaMatrix B)
                          throws VisADException,
                                 IllegalAccessException,
                                 InstantiationException,
                                 InvocationTargetException

Solve X*A = B, which is also A'*X' = B'

Parameters:: B - right hand side
Returns:: solution if A is square, least squares solution otherwise
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

inverse

public JamaMatrix inverse()
                   throws VisADException,
                          IllegalAccessException,
                          InstantiationException,
                          InvocationTargetException

Matrix inverse or pseudoinverse.

Returns:: inverse(A) if A is square, pseudoinverse otherwise
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

det

public double det()
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Matrix determinant.

Returns:: determinant
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

rank

public int rank()
         throws VisADException,
                IllegalAccessException,
                InstantiationException,
                InvocationTargetException

Matrix rank.

Returns:: effective numerical rank, obtained from SVD
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

cond

public double cond()
            throws VisADException,
                   IllegalAccessException,
                   InstantiationException,
                   InvocationTargetException

Matrix condition (2 norm).

Returns:: ratio of largest to smallest singular value
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

trace

public double trace()
             throws VisADException,
                    IllegalAccessException,
                    InstantiationException,
                    InvocationTargetException

Matrix trace.

Returns:: sum of the diagonal elements
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

random

public static JamaMatrix random(int m,
                                int n)
                         throws VisADException,
                                IllegalAccessException,
                                InstantiationException,
                                InvocationTargetException

Generate matrix with random elements.

Parameters:: m - Number of rows; n - Number of colums
Returns:: An m-by-n matrix with uniformly distributed random elements
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

identity

public static JamaMatrix identity(int m,
                                  int n)
                           throws VisADException,
                                  IllegalAccessException,
                                  InstantiationException,
                                  InvocationTargetException

Generate identity matrix.

Parameters:: m - Number of rows; n - Number of colums
Returns:: An m-by-n matrix with ones on the diagonal and zeros elsewhere
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

print

public void print(int w,
                  int d)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Print the matrix to stdout. Line the elements up in columns with a Fortran-like 'Fw.d' style format

Parameters:: w - Column width; d - Number of digits after the decimal
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

print

public void print(PrintWriter output,
                  int w,
                  int d)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Print the matrix to the output stream. Line the elements up in columns with a Fortran-like 'Fw.d' style format.

Parameters:: output - Output stream; w - Column width; d - Number of digits after the decimal
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

print

public void print(NumberFormat format,
                  int width)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Print the matrix to stdout. Line the elements up in columns. Use the format object, and right justify within columns of width characters.

Parameters:: format - Formatting object for individual elements; width - Field width for each column
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

print

public void print(PrintWriter output,
                  NumberFormat format,
                  int width)
           throws VisADException,
                  IllegalAccessException,
                  InstantiationException,
                  InvocationTargetException

Print the matrix to the output stream. Line the elements up in columns. Use the format object, and right justify within columns of width characters.

Parameters:: output - the output stream; format - A formatting object to format the matrix elements; width - Column width
Throws:: VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

read

public static JamaMatrix read(BufferedReader input)
                       throws IOException,
                              VisADException,
                              IllegalAccessException,
                              InstantiationException,
                              InvocationTargetException

Read a matrix from a stream. The format is the same the print method, so printed matrices can be read back in. Elements are separated by whitespace, all the elements for each row appear on a single line, the last row is followed by a blank line.

Parameters:: input - the input stream
Throws:: IOException; VisADException; IllegalAccessException; InstantiationException; InvocationTargetException

chol

public JamaCholeskyDecomposition chol()
                               throws VisADException,
                                      RemoteException,
                                      IllegalAccessException,
                                      InstantiationException,
                                      InvocationTargetException

Throws:: VisADException; RemoteException; IllegalAccessException; InstantiationException; InvocationTargetException

eig

public JamaEigenvalueDecomposition eig()
                                throws VisADException,
                                       RemoteException,
                                       IllegalAccessException,
                                       InstantiationException,
                                       InvocationTargetException

Throws:: VisADException; RemoteException; IllegalAccessException; InstantiationException; InvocationTargetException

lu

public JamaLUDecomposition lu()
                       throws VisADException,
                              RemoteException,
                              IllegalAccessException,
                              InstantiationException,
                              InvocationTargetException

Throws:: VisADException; RemoteException; IllegalAccessException; InstantiationException; InvocationTargetException

qr

public JamaQRDecomposition qr()
                       throws VisADException,
                              RemoteException,
                              IllegalAccessException,
                              InstantiationException,
                              InvocationTargetException

Throws:: VisADException; RemoteException; IllegalAccessException; InstantiationException; InvocationTargetException

svd

public JamaSingularValueDecomposition svd()
                                   throws VisADException,
                                          RemoteException,
                                          IllegalAccessException,
                                          InstantiationException,
                                          InvocationTargetException

Throws:: VisADException; RemoteException; IllegalAccessException; InstantiationException; InvocationTargetException

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visad.matrix Class JamaMatrix

JamaMatrix

JamaMatrix

JamaMatrix

JamaMatrix

JamaMatrix

JamaMatrix

convertToMatrix

main

getMatrix

setMatrix

setMatrix

getRowDimension

getColumnDimension

get

getMatrix

getMatrix

getMatrix

getMatrix

set

setMatrix

setMatrix

setMatrix

setMatrix

transpose

norm1

norm2

normInf

normF

uminus

plus

plusEquals

minus

minusEquals

arrayTimes

arrayTimesEquals

arrayRightDivide

arrayRightDivideEquals

arrayLeftDivide

arrayLeftDivideEquals

times

timesEquals

times

solve

solveTranspose

inverse

det

rank

cond

trace

random

identity

print

print

print

print

read

chol

eig

lu

qr

svd

visad.matrix
Class JamaMatrix